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  • Review
  • Open Access
132 Citations
18,463 Views
37 Pages

Integrated Genomic Selection for Accelerating Breeding Programs of Climate-Smart Cereals

  • Dwaipayan Sinha,
  • Arun Kumar Maurya,
  • Gholamreza Abdi,
  • Muhammad Majeed,
  • Rachna Agarwal,
  • Rashmi Mukherjee,
  • Sharmistha Ganguly,
  • Robina Aziz,
  • Manika Bhatia and
  • Jen-Tsung Chen
  • + 6 authors

21 July 2023

Rapidly rising population and climate changes are two critical issues that require immediate action to achieve sustainable development goals. The rising population is posing increased demand for food, thereby pushing for an acceleration in agricultur...

  • Review
  • Open Access
115 Citations
25,077 Views
16 Pages

Vitamin D: An Overview of Gene Regulation, Ranging from Metabolism to Genomic Effects

  • Giacomo Voltan,
  • Michele Cannito,
  • Michela Ferrarese,
  • Filippo Ceccato and
  • Valentina Camozzi

25 August 2023

Vitamin D is a pro-hormone characterized by an intricate metabolism and regulation. It is well known for its role in calcium and phosphate metabolism, and in bone health. However, several studies have assessed a huge number of extra-skeletal function...

  • Review
  • Open Access
88 Citations
17,384 Views
29 Pages

NF-κB: Governing Macrophages in Cancer

  • Jessica Cornice,
  • Daniela Verzella,
  • Paola Arboretto,
  • Davide Vecchiotti,
  • Daria Capece,
  • Francesca Zazzeroni and
  • Guido Franzoso

31 January 2024

Tumor-associated macrophages (TAMs) are the major component of the tumor microenvironment (TME), where they sustain tumor progression and or-tumor immunity. Due to their plasticity, macrophages can exhibit anti- or pro-tumor functions through the exp...

  • Review
  • Open Access
82 Citations
22,055 Views
26 Pages

From Omics to Multi-Omics: A Review of Advantages and Tradeoffs

  • C. Nelson Hayes,
  • Hikaru Nakahara,
  • Atsushi Ono,
  • Masataka Tsuge and
  • Shiro Oka

29 November 2024

Bioinformatics is a rapidly evolving field charged with cataloging, disseminating, and analyzing biological data. Bioinformatics started with genomics, but while genomics focuses more narrowly on the genes comprising a genome, bioinformatics now enco...

  • Review
  • Open Access
72 Citations
22,778 Views
23 Pages

6 August 2024

The rapid advancement of high-throughput technologies, particularly next-generation sequencing (NGS), has revolutionized cancer research by enabling the investigation of genetic variations such as SNPs, copy number variations, gene expression, and pr...

  • Review
  • Open Access
56 Citations
12,802 Views
24 Pages

Fabry Disease in Women: Genetic Basis, Available Biomarkers, and Clinical Manifestations

  • Raafiah Izhar,
  • Margherita Borriello,
  • Antonella La Russa,
  • Rossella Di Paola,
  • Ananya De,
  • Giovambattista Capasso,
  • Diego Ingrosso,
  • Alessandra F. Perna and
  • Mariadelina Simeoni

26 December 2023

Fabry Disease (FD) is a rare lysosomal storage disorder caused by mutations in the GLA gene on the X chromosome, leading to a deficiency in α-galactosidase A (AGAL) enzyme activity. This leads to the accumulation of glycosphingolipids, primarily glob...

  • Review
  • Open Access
54 Citations
20,509 Views
18 Pages

17 August 2023

Severe or chronic stress and trauma can have a detrimental impact on health. Evidence suggests that early-life adversity can become biologically embedded and has the potential to influence health outcomes decades later. Epigenetics is one mechanism t...

  • Review
  • Open Access
51 Citations
12,833 Views
27 Pages

Principles in the Management of Glioblastoma

  • Domingos Roda,
  • Pedro Veiga,
  • Joana Barbosa Melo,
  • Isabel Marques Carreira and
  • Ilda Patrícia Ribeiro

17 April 2024

Glioblastoma, the most aggressive and common malignant primary brain tumour, is characterized by infiltrative growth, abundant vascularization, and aggressive clinical evolution. Patients with glioblastoma often face poor prognoses, with a median sur...

  • Article
  • Open Access
51 Citations
8,424 Views
27 Pages

Current State of Genomics in Nursing: A Scoping Review of Healthcare Provider Oriented (Clinical and Educational) Outcomes (2012–2022)

  • Joanne Thomas,
  • Jordan Keels,
  • Kathleen A. Calzone,
  • Laurie Badzek,
  • Sarah Dewell,
  • Christine Patch,
  • Emma T. Tonkin and
  • Andrew A. Dwyer

27 October 2023

In the 20 years since the initial sequencing of the human genome, genomics has become increasingly relevant to nursing. We sought to chart the current state of genomics in nursing by conducting a systematic scoping review of the literature in four da...

  • Review
  • Open Access
48 Citations
11,105 Views
30 Pages

Mitochondria, a Key Target in Amyotrophic Lateral Sclerosis Pathogenesis

  • Emmanuelle C. Genin,
  • Mélanie Abou-Ali and
  • Véronique Paquis-Flucklinger

24 October 2023

Mitochondrial dysfunction occurs in numerous neurodegenerative diseases, particularly amyotrophic lateral sclerosis (ALS), where it contributes to motor neuron (MN) death. Of all the factors involved in ALS, mitochondria have been considered as a maj...

  • Review
  • Open Access
48 Citations
9,089 Views
21 Pages

Progress in Regenerative Medicine: Exploring Autologous Platelet Concentrates and Their Clinical Applications

  • Laura Giannotti,
  • Benedetta Di Chiara Stanca,
  • Francesco Spedicato,
  • Paola Nitti,
  • Fabrizio Damiano,
  • Christian Demitri,
  • Nadia Calabriso,
  • Maria Annunziata Carluccio,
  • Andrea Palermo and
  • Eleonora Stanca
  • + 1 author

23 August 2023

The goal of regenerative medicine is to achieve tissue regeneration. In the past, commonly used techniques included autologous or allogeneic transplantation and stem cell therapy, which have limitations, such as a lack of donor sites in the case of a...

  • Review
  • Open Access
47 Citations
21,120 Views
27 Pages

12 May 2024

Mitochondrial DNA (mtDNA) exhibits distinct characteristics distinguishing it from the nuclear genome, necessitating specific analytical methods in genetic studies. This comprehensive review explores the complex role of mtDNA in a variety of genetic...

  • Review
  • Open Access
46 Citations
6,601 Views
24 Pages

Oxidative-Stress-Mediated Epigenetic Dysregulation in Spermatogenesis: Implications for Male Infertility and Offspring Health

  • Aris Kaltsas,
  • Eleftheria Markou,
  • Maria-Anna Kyrgiafini,
  • Athanasios Zikopoulos,
  • Evangelos N. Symeonidis,
  • Fotios Dimitriadis,
  • Athanasios Zachariou,
  • Nikolaos Sofikitis and
  • Michael Chrisofos

17 January 2025

Male reproductive health is governed by an intricate interplay of genetic, epigenetic, and environmental factors. Epigenetic mechanisms—encompassing DNA methylation, histone modifications, and non-coding RNA activity—are crucial both for...

  • Review
  • Open Access
45 Citations
21,525 Views
15 Pages

Preimplantation Genetic Testing for Genetic Diseases: Limits and Review of Current Literature

  • Roberta Giuliano,
  • Anna Maione,
  • Angela Vallefuoco,
  • Ugo Sorrentino and
  • Daniela Zuccarello

17 November 2023

Preimplantation genetic testing (PGT) has emerged as a revolutionary technique in the field of reproductive medicine, allowing for the selection and transfer of healthy embryos, thus reducing the risk of transmitting genetic diseases. However, despit...

  • Review
  • Open Access
44 Citations
8,258 Views
25 Pages

Insights into Salinity Tolerance in Wheat

  • Zechao Zhang,
  • Zelin Xia,
  • Chunjiang Zhou,
  • Geng Wang,
  • Xiao Meng and
  • Pengcheng Yin

29 April 2024

Salt stress has a detrimental impact on food crop production, with its severity escalating due to both natural and man-made factors. As one of the most important food crops, wheat is susceptible to salt stress, resulting in abnormal plant growth and...

  • Review
  • Open Access
44 Citations
16,114 Views
34 Pages

A Comprehensive Review of Deep Learning Applications with Multi-Omics Data in Cancer Research

  • Flavio Sartori,
  • Francesco Codicè,
  • Isabella Caranzano,
  • Cesare Rollo,
  • Giovanni Birolo,
  • Piero Fariselli and
  • Corrado Pancotti

28 May 2025

The integration of deep learning (DL) with multi-omics data has significantly advanced our understanding of biological systems, particularly in cancer research. DL enables the analysis of high-dimensional datasets and the discovery of novel disease m...

  • Review
  • Open Access
43 Citations
12,530 Views
21 Pages

The Genetics of Tuberous Sclerosis Complex and Related mTORopathies: Current Understanding and Future Directions

  • Alice Man,
  • Matteo Di Scipio,
  • Shan Grewal,
  • Yujin Suk,
  • Elisabetta Trinari,
  • Resham Ejaz and
  • Robyn Whitney

4 March 2024

The mechanistic target of rapamycin (mTOR) pathway serves as a master regulator of cell growth, proliferation, and survival. Upregulation of the mTOR pathway has been shown to cause malformations of cortical development, medically refractory epilepsi...

  • Review
  • Open Access
42 Citations
18,719 Views
12 Pages

Application of the Yamanaka Transcription Factors Oct4, Sox2, Klf4, and c-Myc from the Laboratory to the Clinic

  • Marisol Aguirre,
  • Manuela Escobar,
  • Sebastián Forero Amézquita,
  • David Cubillos,
  • Camilo Rincón,
  • Paula Vanegas,
  • María Paula Tarazona,
  • Sofía Atuesta Escobar,
  • Juan Camilo Blanco and
  • Luis Gustavo Celis

26 August 2023

The transcription factors Oct4, Sox2, Klf4, and c-Myc enable the reprogramming of somatic cells into induced pluripotent cells. Reprogramming generates newly differentiated cells for potential therapies in cancer, neurodegenerative diseases, and reju...

  • Article
  • Open Access
40 Citations
8,836 Views
13 Pages

Germline CNV Detection through Whole-Exome Sequencing (WES) Data Analysis Enhances Resolution of Rare Genetic Diseases

  • Faidon-Nikolaos Tilemis,
  • Nikolaos M. Marinakis,
  • Danai Veltra,
  • Maria Svingou,
  • Kyriaki Kekou,
  • Anastasios Mitrakos,
  • Maria Tzetis,
  • Konstantina Kosma,
  • Periklis Makrythanasis and
  • Christalena Sofocleous
  • + 1 author

21 July 2023

Whole-Exome Sequencing (WES) has proven valuable in the characterization of underlying genetic defects in most rare diseases (RDs). Copy Number Variants (CNVs) were initially thought to escape detection. Recent technological advances enabled CNV call...

  • Review
  • Open Access
40 Citations
13,968 Views
18 Pages

1 June 2024

Gene therapy holds promise as a transformative approach in the treatment landscape of age-related macular degeneration (AMD), diabetic retinopathy (DR), and diabetic macular edema (DME), aiming to address the challenges of frequent intravitreal anti-...

  • Review
  • Open Access
39 Citations
14,516 Views
19 Pages

Review of Personalized Medicine and Pharmacogenomics of Anti-Cancer Compounds and Natural Products

  • Yalan Zhou,
  • Siqi Peng,
  • Huizhen Wang,
  • Xinyin Cai and
  • Qingzhong Wang

8 April 2024

In recent years, the FDA has approved numerous anti-cancer drugs that are mutation-based for clinical use. These drugs have improved the precision of treatment and reduced adverse effects and side effects. Personalized therapy is a prominent and hot...

  • Review
  • Open Access
39 Citations
6,646 Views
15 Pages

Federated Learning: Breaking Down Barriers in Global Genomic Research

  • Giulia Calvino,
  • Cristina Peconi,
  • Claudia Strafella,
  • Giulia Trastulli,
  • Domenica Megalizzi,
  • Sarah Andreucci,
  • Raffaella Cascella,
  • Carlo Caltagirone,
  • Stefania Zampatti and
  • Emiliano Giardina

22 December 2024

Recent advancements in Next-Generation Sequencing (NGS) technologies have revolutionized genomic research, presenting unprecedented opportunities for personalized medicine and population genetics. However, issues such as data silos, privacy concerns,...

  • Review
  • Open Access
39 Citations
4,815 Views
27 Pages

10 July 2025

The escalating impacts of climate change pose significant threats to global agriculture, necessitating a rapid development of climate-resilient crop varieties. The integration of multi-omics technologies—such as genomics, transcriptomics, prote...

  • Article
  • Open Access
38 Citations
4,000 Views
15 Pages

19 July 2023

In higher plants, light-harvesting chlorophyll a/b binding (Lhc) proteins play a vital role in photosynthetic processes and are widely involved in the regulation of plant growth, development, and response to abiotic stress. However, the Lhc gene fami...

  • Review
  • Open Access
38 Citations
4,864 Views
18 Pages

From Species to Varieties: How Modern Sequencing Technologies Are Shaping Medicinal Plant Identification

  • Mingcheng Wang,
  • Haifeng Lin,
  • Hongqiang Lin,
  • Panyue Du and
  • Shuqiao Zhang

26 December 2024

Background/Objectives: Modern sequencing technologies have transformed the identification of medicinal plant species and varieties, overcoming the limitations of traditional morphological and chemical approaches. This review explores the key DNA-base...

  • Review
  • Open Access
37 Citations
6,745 Views
15 Pages

Workability of mRNA Sequencing for Predicting Protein Abundance

  • Elena A. Ponomarenko,
  • George S. Krasnov,
  • Olga I. Kiseleva,
  • Polina A. Kryukova,
  • Viktoriia A. Arzumanian,
  • Georgii V. Dolgalev,
  • Ekaterina V. Ilgisonis,
  • Andrey V. Lisitsa and
  • Ekaterina V. Poverennaya

11 November 2023

Transcriptomics methods (RNA-Seq, PCR) today are more routine and reproducible than proteomics methods, i.e., both mass spectrometry and immunochemical analysis. For this reason, most scientific studies are limited to assessing the level of mRNA cont...

  • Review
  • Open Access
37 Citations
13,138 Views
21 Pages

19 March 2024

Transfer RNAs (tRNAs) are heavily decorated with post-transcriptional chemical modifications. Approximately 100 different modifications have been identified in tRNAs, and each tRNA typically contains 5–15 modifications that are incorporated at...

  • Review
  • Open Access
36 Citations
13,882 Views
31 Pages

Genetic Basis of Breast and Ovarian Cancer: Approaches and Lessons Learnt from Three Decades of Inherited Predisposition Testing

  • Valeria Barili,
  • Enrico Ambrosini,
  • Beatrice Bortesi,
  • Roberta Minari,
  • Erika De Sensi,
  • Ilenia Rita Cannizzaro,
  • Antonietta Taiani,
  • Maria Michiara,
  • Angelica Sikokis and
  • Benedetta Pellegrino
  • + 11 authors

8 February 2024

Germline variants occurring in BRCA1 and BRCA2 give rise to hereditary breast and ovarian cancer (HBOC) syndrome, predisposing to breast, ovarian, fallopian tube, and peritoneal cancers marked by elevated incidences of genomic aberrations that corres...

  • Review
  • Open Access
33 Citations
9,531 Views
22 Pages

Oxidative Stress Biomarkers in Male Infertility: Established Methodologies and Future Perspectives

  • Filomena Mottola,
  • Ilaria Palmieri,
  • Maria Carannante,
  • Angela Barretta,
  • Shubhadeep Roychoudhury and
  • Lucia Rocco

25 April 2024

Male fertility can be affected by oxidative stress (OS), which occurs when an imbalance between the production of reactive oxygen species (ROS) and the body’s ability to neutralize them arises. OS can damage cells and influence sperm production...

  • Article
  • Open Access
32 Citations
9,234 Views
22 Pages

Amplicon-Based Microbiome Profiling: From Second- to Third-Generation Sequencing for Higher Taxonomic Resolution

  • Elisabetta Notario,
  • Grazia Visci,
  • Bruno Fosso,
  • Carmela Gissi,
  • Nina Tanaskovic,
  • Maria Rescigno,
  • Marinella Marzano and
  • Graziano Pesole

31 July 2023

The 16S rRNA amplicon-based sequencing approach represents the most common and cost-effective strategy with great potential for microbiome profiling. The use of second-generation sequencing (NGS) technologies has led to protocols based on the amplifi...

  • Article
  • Open Access
32 Citations
5,709 Views
18 Pages

Heterochromatin Is Not the Only Place for satDNAs: The High Diversity of satDNAs in the Euchromatin of the Beetle Chrysolina americana (Coleoptera, Chrysomelidae)

  • José M. Rico-Porras,
  • Pablo Mora,
  • Teresa Palomeque,
  • Eugenia E. Montiel,
  • Diogo C. Cabral-de-Mello and
  • Pedro Lorite

22 March 2024

The satellitome of the beetle Chrysolina americana Linneo, 1758 has been characterized through chromosomal analysis, genomic sequencing, and bioinformatics tools. C-banding reveals the presence of constitutive heterochromatin blocks enriched in A+T c...

  • Review
  • Open Access
32 Citations
6,888 Views
19 Pages

Role of Circulating microRNAs in Liver Disease and HCC: Focus on miR-122

  • Francesco Colaianni,
  • Veronica Zelli,
  • Chiara Compagnoni,
  • Martina Sara Miscione,
  • Mario Rossi,
  • Davide Vecchiotti,
  • Monica Di Padova,
  • Edoardo Alesse,
  • Francesca Zazzeroni and
  • Alessandra Tessitore

12 October 2024

miR-122 is the most abundant microRNA (miRNA) in the liver; it regulates several genes mainly involved in cell metabolism and inflammation. Host factors, diet, metabolic disorders and viral infection promote the development of liver diseases, includi...

  • Review
  • Open Access
31 Citations
6,936 Views
26 Pages

Epigenetic Modulations for Prevention of Infectious Diseases in Shrimp Aquaculture

  • Gunasekara Chathura Wikumpriya,
  • Madhuranga Walawedurage Srinith Prabhatha,
  • Jiye Lee and
  • Chan-Hee Kim

25 August 2023

Aquaculture assumes a pivotal role in meeting the escalating global food demand, and shrimp farming, in particular, holds a significant role in the global economy and food security, providing a rich source of nutrients for human consumption. Nonethel...

  • Article
  • Open Access
31 Citations
5,495 Views
17 Pages

Morphological and Molecular Identification of Hard Ticks in Hainan Island, China

  • Jitrawadee Intirach,
  • Xin Lv,
  • Qian Han,
  • Zhi-Yue Lv and
  • Tao Chen

6 August 2023

Ticks are small, blood-sucking arachnids, known vectors of various diseases, and found throughout the world. They are distributed basically in almost all regions of China. At present, there is not much information regarding tick species on Hainan Isl...

  • Review
  • Open Access
31 Citations
5,785 Views
11 Pages

25 July 2023

Mesenchymal stem cell-derived extracellular vesicles (MSC-EVs) are biologically active substances secreted by MSCs into the extracellular matrix that play an immunomodulatory role in skin damage repair. To investigate the mechanism of MSC-EVs in redu...

  • Review
  • Open Access
31 Citations
12,119 Views
21 Pages

Genetic Advancements in Infantile Epileptic Spasms Syndrome and Opportunities for Precision Medicine

  • Hannah E. Snyder,
  • Puneet Jain,
  • Rajesh RamachandranNair,
  • Kevin C. Jones and
  • Robyn Whitney

21 February 2024

Infantile epileptic spasms syndrome (IESS) is a devastating developmental epileptic encephalopathy (DEE) consisting of epileptic spasms, as well as one or both of developmental regression or stagnation and hypsarrhythmia on EEG. A myriad of aetiologi...

  • Review
  • Open Access
30 Citations
8,263 Views
26 Pages

Nucleic Acids Persistence—Benefits and Limitations in Forensic Genetics

  • Małgorzata Żarczyńska,
  • Piotr Żarczyński and
  • Marcin Tomsia

18 August 2023

The analysis of genetic material may be the only way to identify an unknown person or solve a criminal case. Often, the conditions in which the genetic material was found determine the choice of the analytical method. Hence, it is extremely important...

  • Review
  • Open Access
30 Citations
7,994 Views
42 Pages

12 March 2025

Extracellular vesicles (EVs) are nanovesicles that facilitate intercellular communication by carrying essential biomolecules under physiological and pathological conditions including microRNAs (miRNAs). They are found in various body fluids, such as...

  • Review
  • Open Access
30 Citations
9,560 Views
30 Pages

Indirect DNA Transfer and Forensic Implications: A Literature Review

  • Francesco Sessa,
  • Cristoforo Pomara,
  • Massimiliano Esposito,
  • Patrizia Grassi,
  • Giuseppe Cocimano and
  • Monica Salerno

28 November 2023

Progress in DNA profiling techniques has made it possible to detect even the minimum amount of DNA at a crime scene (i.e., a complete DNA profile can be produced using as little as 100 pg of DNA, equivalent to only 15–20 human cells), leading t...

  • Review
  • Open Access
29 Citations
13,253 Views
22 Pages

A Comprehensive View on the Protein Functions of Porcine Epidemic Diarrhea Virus

  • Xin Li,
  • Yiwan Wu,
  • Zhibin Yan,
  • Gen Li,
  • Jun Luo,
  • Shile Huang and
  • Xiaofeng Guo

26 January 2024

Porcine epidemic diarrhea (PED) virus (PEDV) is one of the main pathogens causing diarrhea in piglets and fattening pigs. The clinical signs of PED are vomiting, acute diarrhea, dehydration, and mortality resulting in significant economic losses and...

  • Review
  • Open Access
29 Citations
5,728 Views
14 Pages

The Regulatory Role of MicroRNAs in Obesity and Obesity-Derived Ailments

  • Javier A. Benavides-Aguilar,
  • Andrea Torres-Copado,
  • José Isidoro-Sánchez,
  • Surajit Pathak,
  • Asim K. Duttaroy,
  • Antara Banerjee and
  • Sujay Paul

13 November 2023

Obesity is a condition that is characterized by the presence of excessive adipose tissue in the body. Obesity has become one of the main health concerns worldwide since it can lead to other chronic ailments, such as type 2 diabetes or fatty liver dis...

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Genes - ISSN 2073-4425